How do I view my chromatograms? In order to view your chromatogram files, there are three steps to follow:.

1. Chromatogram Mac

I will discuss each of these three steps in order. Obtain a Program That Can Open Chromatogram Files. Chromatogram files are NOT in a ‘standard’ graphics format. You cannot open them with GIF or JPG viewers, or Photoshop or whatever.

They are data files specific to DNA sequencing, and you need specific programs that understand the raw data in these files and understands how to present it as a four-color graph.There are many programs that can do this, and many of them are free or inexpensive shareware. Some of the best ones are costly but are very feature-rich and capable.Programs that can read DNA sequencing chromatogram files include (Free Programs for Typical Desktop Computers):. A free program for viewing or printing chromatograms for the PC. You can get it directly from ABI by clicking on the link above. Yes, I know it’s odd to see ‘free’ and ‘ABI’ in the same sentence! This one will print your chromats, allow you to edit them, or export the text sequence to other programs. It is especially usefull for scanning lots of chromats fast.

Kutools for mac word. Convenient group of MS Excel and MS Word add-ons which can allow you to eliminate empty cells and unite many tables in precisely the same moment. Though MS Excel is a really rich and complicated program, at times it becomes annoying, repetitive and time-consuming. Currently in this sort of scenario.

is a free software by Geospiza allows you to viewand print DNA sequence traces on Linux, Mac OSX, Windows, and Solaris. from Neefix Laboratories. A VERY nifty (and free!) program for viewing, editing or printing chromatograms, for the OS X Macintosh ONLY. It does some cool peak-smoothing to make the traces look very clean. Plan on publishing a chromat? Use this software to make the final figure!

Thanks, Neefix, for this excellent program. (In my experience, the print-outs aren’t as nice as some other programs, but the beautiful on-screen display is the biggest benefit of this program.)., by Conor McCarthy, runs under the various flavors of Windows (3.x, Win95, 98, NT, XP). The page above is the Chromas Home Page.: The people who sell phred and phrap have set up a company that also distributes TraceViewer, a chromatogram viewer that is free for academic users. Versions are available for Windows, Mac and Unix.Large packages (typically for server-class systems) that include chromatogram viewing:.: A suite of Unix-based programs for sequence data management. Industrial-strength shotgun sequence assembly software from Phil Green, Brent Ewing and David Gordon. This package is used by many of the major genome centers.

Prospective commercial users can also go to a commercial site, to obtain these programs, and others from the same people (e.g. See TraceViewer, above).Commercial Packages for Typical Desktop Computers:.: A very expensive program. Use it only if you have your own sequencer.: A very good sequence assembly program, with versions for both the PC and the Macintosh. This allows the user to view chromoatograms during shotgun assemmbly.

Please click here to learn why sequence assembly is easier with a program that can use chromatograms.: This is a very complete DNA analysis package that includes the ability to view chromatograms and to use them in shotgun assembly. Please click here to learn why sequence assembly is easier with a program that can use chromatograms.: This long-lived program was recently updated to allow viewing chromatogram files, plus it runs under MacOSX – the only complete sequence analysis program of which I am aware. It appears that it cannot show the raw trace data, however – a distinct deficiency, in my opinion, but a common one for these chromat viewers.Programs that can read Genotyping/fragment analysis chromatogram files include:.: This is a FREE program from Applied Biosystems, the company that made our sequencers. I have heard good things about its capabilities, and some of the Core employees have tried it out, as well as several of our clients.

I have not tried it myself yet.: While this program is not free by any means, the UM DNA Sequencing Core has several copies available for checkout, free for our on-campus Core clients. This program is for the PC only. from Van Mierlo Software Consultancy: Many people have reported success using this program in the past, but we have no recent experience with it. According to its author, this program runs on Windows machines of all sorts, as well as Mac/Intel and Macs emulating a PC. See the above link for further information.

from the Veterinary Genetics Laboratory at UC-Davis: I know little about this program. It is open-source, distributed under the GNU General Public License, which is a marvelous idea. The screenshots look super, the executable download runs on various Windows machines, and the source code is available (presumably so you can try installing it on other computers). Configure your computer so it recognizes chromatogram files. Different computers use different mechanisms to recognize a file’s content and to call up the appropriate software to open it. Not surprisingly, Macs and PCs are quite different in the way they approach this task. Here’s how you tell your computer what to do with files of type ‘.ab1’.A Windows system (‘PC’) recognizes files types by the three-letter extension.

A file ending in ‘.txt’ is expected to contain text, and can be opened with, say, WordPad. A file ending with ‘.doc’ is more complicated, and should be opened with Microsoft Word.

Sequencing chromatograms should end in ‘.ab1’, and your computer needs to open it with Chromas or Sequence Scanner Software 1.0 or similar. Genotyping (Fragment Analysis) chromatograms end in “.fsa”, and should be opened with GeneMarker, DAx, STRand or similar. To tell Windows what program to use: download the first chromat file, then double-click it. A window will pop up telling you it doesn’t know how to open the file. It will offer to let you browse for the correct application.

Do so – choose the chromat viewer you downloaded above. Windows should thenceforth remember what program to use. You can continue to download the rest of your files. An OS X Macintosh also recognizes files types by the three-letter extension. A file ending in ‘.txt’ is expected to contain text, and can be opened with, say, TextEdit. A file ending with ‘.doc’ is more complicated, and should be opened with Microsoft Word. Sequencing chromatograms should end in ‘.ab1’, and your computer needs to open it with, say, FinchTV (see above).

Chromatogram Mac

Genotyping (Fragment Analysis) chromatograms end in “.fsa”, and you MAY be able to open them with DAx, STRand or similar, but Mac users are more limited here. I have had some success with running GeneMarker under PC emulators. To tell an OS X Mac what program to use: download the first chromat file, then single-click it and pull the ‘File’ menu to ‘Get Info (or type command-I).

In the resulting window, click the arrow next to ‘Open With:’, and in the pop-up menu button underneath, browse for the chromatogram viewer application. You may wish to click the ‘Change All’ button, to tell your computer that it should always use that application for ‘ab1’ files. Access our Data Server to obtain your chromatogram files. If you’ve completed the above two steps, you should be all set to download all your chromatogram files. If you get some ‘ab1’ files and still cannot open them, please review the first two steps, above. You have two choices for downloading files:. Just a Few Files: Download Them via Web: If you have only a few files, it’s easiest to use the login screen in our page.

Identify your PI in the form and click ‘Login’. A password screen will pop up asking for your PI’s Login name (again) and your lab password. Type the PI Login in lower-case, please. Once you are logged in, click on a lab member’s name and you’ll get a list of chromatogram and seq files.

Click on any file to download it. If your computer asks you what to do with the file, just tell it to save the file to disk. You can open the file later using your chromat viewer. Everyone in the lab should know the lab password! It is required for downloading results as well as for editing or deleting submited samples!. Lots of Files: Use an FTP Client: Rather than clicking on dozens of files one at a time (as with the web-based download, above, you can get lots of files quickly using typical FTP clients. Mac users can try while Windows partisans might try.

Set the host to: client-seqcore.brcf.med.umich.edu Please set your program to use PASSIVE transfers! Check the instructions that come with your FTP program to find out how to set it for ‘passive’ connections, how to open a new connection, how to open folders, how to request files to be transferred. Usually it is possible to request dozens or even hundreds of files at once.

In older FTP clients, this was the ‘mget’ command, but in newer graphical clients, it may be as simple as dragging. NOTE: It is no longer necessary to set the port number to 8721. The ‘normal’ FTP port should now work. PLEASE NOTE: Off Campus clients will NOT be able to access the FTP server without special arrangement with the Core Director, due to our network security methods.

Please use the web-based method, if at all possible. If you find you really must use FTP, please contact me.

How to Uninstall Xhromatogram 0.10.1 Application/Software on Your Mac Unlike the software developed for Windows system, most of the applications installed in Mac OS X generally can be removed with relative ease. Xhromatogram 0.10.1 is a third party application that provides additional functionality to OS X system and enjoys a popularity among Mac users.

However, instead of installing it by dragging its icon to the Application folder, uninstalling Xhromatogram 0.10.1 may need you to do more than a simple drag-and-drop to the Trash. When installed, Xhromatogram 0.10.1 creates files in several locations. Generally, its additional files, such as preference files and application support files, still remains on the hard drive after you delete Xhromatogram 0.10.1 from the Application folder, in case that the next time you decide to reinstall it, the settings of this program still be kept. But if you are trying to uninstall Xhromatogram 0.10.1 in full and free up your disk space, removing all its components is highly necessary. Continue reading this article to learn about the proper methods for uninstalling Xhromatogram 0.10.1. Manually uninstall Xhromatogram 0.10.1 step by step: Most applications in Mac OS X are bundles that contain all, or at least most, of the files needed to run the application, that is to say, they are self-contained. Thus, different from the program uninstall method of using the control panel in Windows, Mac users can easily drag any unwanted application to the Trash and then the removal process is started.

Despite that, you should also be aware that removing an unbundled application by moving it into the Trash leave behind some of its components on your Mac. To fully get rid of Xhromatogram 0.10.1 from your Mac, you can manually follow these steps: 1. Terminate Xhromatogram 0.10.1 process(es) via Activity Monitor Before uninstalling Xhromatogram 0.10.1, you’d better quit this application and end all its processes.

If Xhromatogram 0.10.1 is frozen, you can press Cmd +Opt + Esc, select Xhromatogram 0.10.1 in the pop-up windows and click Force Quit to quit this program (this shortcut for force quit works for the application that appears but not for its hidden processes). Open Activity Monitor in the Utilities folder in Launchpad, and select All Processes on the drop-down menu at the top of the window.

Select the process(es) associated with Xhromatogram 0.10.1 in the list, click Quit Process icon in the left corner of the window, and click Quit in the pop-up dialog box (if that doesn’t work, then try Force Quit). Delete Xhromatogram 0.10.1 application using the Trash First of all, make sure to log into your Mac with an administrator account, or you will be asked for a password when you try to delete something. Open the Applications folder in the Finder (if it doesn’t appear in the sidebar, go to the Menu Bar, open the “Go” menu, and select Applications in the list), search for Xhromatogram 0.10.1 application by typing its name in the search field, and then drag it to the Trash (in the dock) to begin the uninstall process. Alternatively you can also click on the Xhromatogram 0.10.1 icon/folder and move it to the Trash by pressing Cmd + Del or choosing the File and Move to Trash commands. For the applications that are installed from the App Store, you can simply go to the Launchpad, search for the application, click and hold its icon with your mouse button (or hold down the Option key), then the icon will wiggle and show the “X” in its left upper corner.

Click the “X” and click Delete in the confirmation dialog. Remove all components related to Xhromatogram 0.10.1 in Finder Though Xhromatogram 0.10.1 has been deleted to the Trash, its lingering files, logs, caches and other miscellaneous contents may stay on the hard disk. For complete removal of Xhromatogram 0.10.1, you can manually detect and clean out all components associated with this application. You can search for the relevant names using Spotlight. Those preference files of Xhromatogram 0.10.1 can be found in the Preferences folder within your user’s library folder (/Library/Preferences) or the system-wide Library located at the root of the system volume (/Library/Preferences/), while the support files are located in '/Library/Application Support/' or '/Library/Application Support/'. Open the Finder, go to the Menu Bar, open the “Go” menu, select the entry: Go to Folder. And then enter the path of the Application Support folder:/Library Search for any files or folders with the program’s name or developer’s name in the /Library/Preferences/, /Library/Application Support/ and /Library/Caches/ folders.

Right click on those items and click Move to Trash to delete them. Meanwhile, search for the following locations to delete associated items:. /Library/Preferences/. /Library/Application Support/. /Library/Caches/ Besides, there may be some kernel extensions or hidden files that are not obvious to find.

In that case, you can do a Google search about the components for Xhromatogram 0.10.1. Usually kernel extensions are located in in /System/Library/Extensions and end with the extension.kext, while hidden files are mostly located in your home folder. You can use Terminal (inside Applications/Utilities) to list the contents of the directory in question and delete the offending item. Empty the Trash to fully remove Xhromatogram 0.10.1 If you are determined to delete Xhromatogram 0.10.1 permanently, the last thing you need to do is emptying the Trash.

To completely empty your trash can, you can right click on the Trash in the dock and choose Empty Trash, or simply choose Empty Trash under the Finder menu (Notice: you can not undo this act, so make sure that you haven’t mistakenly deleted anything before doing this act. If you change your mind, before emptying the Trash, you can right click on the items in the Trash and choose Put Back in the list). In case you cannot empty the Trash, reboot your Mac. Tips for the app with default uninstall utility: You may not notice that, there are a few of Mac applications that come with dedicated uninstallation programs. Though the method mentioned above can solve the most app uninstall problems, you can still go for its installation disk or the application folder or package to check if the app has its own uninstaller first.

If so, just run such an app and follow the prompts to uninstall properly. After that, search for related files to make sure if the app and its additional files are fully deleted from your Mac. Automatically uninstall Xhromatogram 0.10.1 with MacRemover (recommended): No doubt that uninstalling programs in Mac system has been much simpler than in Windows system. But it still may seem a little tedious and time-consuming for those OS X beginners to manually remove Xhromatogram 0.10.1 and totally clean out all its remnants.

Why not try an easier and faster way to thoroughly remove it? If you intend to save your time and energy in uninstalling Xhromatogram 0.10.1, or you encounter some specific problems in deleting it to the Trash, or even you are not sure which files or folders belong to Xhromatogram 0.10.1, you can turn to a professional third-party uninstaller to resolve troubles.

Here MacRemover is recommended for you to accomplish Xhromatogram 0.10.1 uninstall within three simple steps. MacRemover is a lite but powerful uninstaller utility that helps you thoroughly remove unwanted, corrupted or incompatible apps from your Mac. Now let’s see how it works to complete Xhromatogram 0.10.1 removal task. Download MacRemover and install it by dragging its icon to the application folder. Launch MacRemover in the dock or Launchpad, select Xhromatogram 0.10.1 appearing on the interface, and click Run Analysis button to proceed.

Review Xhromatogram 0.10.1 files or folders, click Complete Uninstall button and then click Yes in the pup-up dialog box to confirm Xhromatogram 0.10.1 removal. The whole uninstall process may takes even less than one minute to finish, and then all items associated with Xhromatogram 0.10.1 has been successfully removed from your Mac! Benefits of using MacRemover: MacRemover has a friendly and simply interface and even the first-time users can easily operate any unwanted program uninstallation. With its unique Smart Analytic System, MacRemover is capable of quickly locating every associated components of Xhromatogram 0.10.1 and safely deleting them within a few clicks. Thoroughly uninstalling Xhromatogram 0.10.1 from your mac with MacRemover becomes incredibly straightforward and speedy, right? You don’t need to check the Library or manually remove its additional files. Actually, all you need to do is a select-and-delete move.

As MacRemover comes in handy to all those who want to get rid of any unwanted programs without any hassle, you’re welcome to download it and enjoy the excellent user experience right now! This article provides you two methods (both manually and automatically) to properly and quickly uninstall Xhromatogram 0.10.1, and either of them works for most of the apps on your Mac. If you confront any difficulty in uninstalling any unwanted application/software, don’t hesitate to apply this automatic tool and resolve your troubles.